cvpl_tools
Contents:
Introduction
Quickstart
Viewing and IO of OME Zarr
Setting Up the Script
Defining Segmentation Pipeline
Result Caching
nn-UNet
Beta-Amyloid Plaque Detection
Dev Setup
API Reference
cvpl_tools.ome_zarr.napari.add.py
cvpl_tools.ome_zarr.io.py
cvpl_tools.tools.fs.py
cvpl_tools.im.ndblock.py
cvpl_tools.im.process
cvpl_tools.im.algs
cvpl_tools
Index
Index
A
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B
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C
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D
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G
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I
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L
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M
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N
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O
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P
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R
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S
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T
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W
A
affine_transform_nearest() (in module cvpl_tools.im.algs.dask_ndinterp)
as_dask_array() (cvpl_tools.im.ndblock.NDBlock method)
B
block_to_block_forward() (in module cvpl_tools.im.process.base)
bs_lc_to_os_forward() (in module cvpl_tools.im.process.base)
bs_to_os_watershed3sizes() (in module cvpl_tools.im.process.bs_to_os)
C
cdir_commit() (in module cvpl_tools.tools.fs)
cdir_init() (in module cvpl_tools.tools.fs)
cdir_query() (in module cvpl_tools.tools.fs)
D
display() (in module cvpl_tools.tools.fs)
G
get_chunksize() (cvpl_tools.im.ndblock.NDBlock method)
group() (in module cvpl_tools.ome_zarr.napari.add)
group_from_path() (in module cvpl_tools.ome_zarr.napari.add)
I
in_to_bs_custom() (in module cvpl_tools.im.process.base)
in_to_bs_simple_threshold() (in module cvpl_tools.im.process.base)
in_to_cc_sum_scaled_intensity() (in module cvpl_tools.im.process.base)
in_to_lc_blobdog_forward() (in module cvpl_tools.im.process.base)
is_numpy() (cvpl_tools.im.ndblock.NDBlock method)
L
label() (in module cvpl_tools.im.algs.dask_label)
lc_interpretable_napari() (in module cvpl_tools.im.process.base)
lc_to_cc_count_lc_by_size() (in module cvpl_tools.im.process.lc_to_cc)
lc_to_cc_count_lc_edge_penalized() (in module cvpl_tools.im.process.lc_to_cc)
load() (cvpl_tools.im.ndblock.NDBlock static method)
(in module cvpl_tools.tools.fs)
load_dask_array_from_path() (in module cvpl_tools.ome_zarr.io)
load_zarr_group_from_path() (in module cvpl_tools.ome_zarr.io)
M
map_ndblocks() (cvpl_tools.im.ndblock.NDBlock static method)
N
NDBlock (class in cvpl_tools.im.ndblock)
ndim (cvpl_tools.im.ndblock.NDBlock property)
O
os_to_cc_count_os_by_size() (in module cvpl_tools.im.process.os_to_cc)
os_to_lc_direct() (in module cvpl_tools.im.process.os_to_lc)
P
persist() (cvpl_tools.im.ndblock.NDBlock method)
R
reduce() (cvpl_tools.im.ndblock.NDBlock method)
ReprFormat (class in cvpl_tools.im.ndblock)
S
save() (cvpl_tools.im.ndblock.NDBlock static method)
(in module cvpl_tools.tools.fs)
scale_nearest() (in module cvpl_tools.im.algs.dask_ndinterp)
select_columns() (cvpl_tools.im.ndblock.NDBlock method)
subarray() (in module cvpl_tools.ome_zarr.napari.add)
subarray_from_path() (in module cvpl_tools.ome_zarr.napari.add)
sum() (cvpl_tools.im.ndblock.NDBlock method)
T
to_dask_array() (cvpl_tools.im.ndblock.NDBlock method)
to_dict_block_index_slices() (cvpl_tools.im.ndblock.NDBlock method)
to_numpy_array() (cvpl_tools.im.ndblock.NDBlock method)
W
write_ome_zarr_image() (in module cvpl_tools.ome_zarr.io)